Issue #377
In case the dump is already suspended, the resume stage is dealt
correctly

correction

Issue #376

In case of big dump file, directory /tmp can be saturated with the
testCorruptedFiles test.

Fixes #377
Useful when reading a SRTM tile which needs the also reading of the
geoid that use SimpleTile.getElevationAtIndices method, which is dumped,
and lead to wrongly dump geoid data.

If the flag is set to true, we use in the DumpReplayer the default
MultiLayerModel. In case the user uses another model, one must asks the
user's model for debug purpose.
The dump files were updated to add the atmospheric refraction flag in
the direct loc and inverse loc lines.

Fixes #377

Complete Issue 376 resolution, as the solution was not converging in
some cases.

Conflicts:
	src/test/java/org/orekit/rugged/errors/DumpReplayerTest.java

refiningIntersection

Fixes #376

refiningIntersection

Fixes #376

In case the inverse location failed, but computation continue (for
instance while computing an inverse loc grid), the user can manage the
failure and continue the computation of the grid. So the atmospheric
computation must be reactivated.